Publications

Proceedings | Abstracts | Publications

Proceedings

J. de Ryk, M. Raghavan, J. Reinhardt, J. Thiesse, E. Namati, and G. McLennan, "A Finite Element Model of the Human Alveolar Sac to Investigate Normal and Emphysematous States," presented at American Thoracic Soceity, San Francisco, CA, 2007.

J. de Ryk, J. Weydert, J. Thiesse, E. Namati, J. Reinhardt, W. Lynch, and G. McLennan, "Lung Adenocarcinoma: 3D Tissue Content and Distribution," presented at American Thoracic Soceity, San Francisco, CA, 2007.

J. de Ryk, J. Weydert, G. Christensen, J. Thiesse, E. Namati, J. Reinhardt, E. Hoffman, and G. McLennan, "Three-dimensional histopathology of lung cancer with multimodality image registration," presented at Medical Imaging 2007: Image Processing, San Diego, CA, USA,
2007.

E. Namati, J. Thiesse, J. de Ryk, and G. McLennan, "In vivo imaging of alveoli," presented at American Thoracic Society, San Francisco, CA, 2007.

E. Namati, J. Thiesse, J. de Ryk, and G. McLennan, "Imaging of Fresh Intact Mice Lungs during Respiration," presented at American Thoracic Society, San Francisco, CA, 2007.

E. Namati, J. Thiesse, J. de Ryk, and G. McLennan, "Dynamic in vivo Alveolar Morphology Using a Novel Laser Scanning Confocal Microscope," presented at 9th Biennial Conference of the Australian Pattern Recognition Society on Digital Image Computing Techniques and
Applications (DICTA 2007), Adelaide, Australia, 2007.

E. E. O'Brien, J. Reinhardt, Z. Towfic, E. Namati, J. S. Ferguson, and G. McLennan, "Quantitative Color and Texture Analysis of Human Airways," presented at American Thoracic Soceity, San Francisco, CA, 2007.

J. Thiesse, E. Namati, J. de Ryk, J. Reinhardt, E. Hoffman, and G. McLennan, "3D Anatomy of the Normal Airway Tree in Three Strains of Mice Using Micro-CT and Pathology Techniques," presented at American Thoracic Society, San Francisco, CA, 2007.

E. Namati, D. Chon, J. Thiesse, E. A. Hoffman, A. Ross, and G. McLennan, "In vivo micro-CT imaging of mice lungs using a novel breath hold technique," presented at Society for Molecular Imaging, Hawaii, Big Island, 2006.

E. Namati, D. Chon, J. Thiesse, A. Ross, G. McLennan, and E. A. Hoffman, "Comparison of Four Micro-CT Gating Techniques for Physiologic and Anatomical Analysis of Mouse Lungs In-Vivo," presented at American Thoracic Society, San Diego, CA, 2006.

J. Thiesse, E. Namati, J. de Ryk, E. Hoffman, J. Reinhardt, and G. McLennan, "Three Dimensional Anatomical Description of the Normal Airway Tree in Three Strains of Mice," presented at Society for Molecular Imaging, Hawaii, Big Island, 2006.

J. de Ryk, J. Thiesse, J. Reinhardt, E. A. Hoffman, and G. McLennan, "Establishing multi-modality datasets with incorporation of 3D histopathology, for soft tissue classification," Proceedings of SPIE: Medical Imaging, vol. (in press), 2006.

E. Namati, D. Chon, J. R. Thiesse, G. McLennan, J. Sieren, A. Ross, and E. Hoffman, "In Vivo Micro-CT Imaging of the Murine Lung via a Computer Controlled Intermittent Iso-Pressure Breath Hold (IIBH) Technique," presented at Medical Imaging, San Diego, CA, 2006.

J. R. Thiesse, J. Reinhardt, J. De Ryk, E. Namati, J. Leinen, W. Recheis, E. Hoffman, and G. McLennan, "Three-dimensional visual truth of normal airway tree for use as a quantitative comparison to micro-CT reconstructions," presented at Medical Imaging, San Diego, CA, 2005.

Suter M, Reinhardt JM, Riker D, Ferguson JS, McLennan G. Classification of pulmonary airway disease based on mucosal color analysis. In: Amini AA, Manduca A, editors. Proceedings of SPIE Medical Imaging 2005: Physiology, Function, and Structure from Medical Images; 2005 Feb 13-15, San Diego, CA, USA; 5746:465-73.

Suter M, Reinhardt JM, Hoffman EA, McLennan G. 3D Pulmonary airway color image reconstruction via shape from shading and virtual bronchoscopy imaging techniques. In: Fitzpatrick JM, Reinhardt JM, editors. Proceedings of SPIE Medical Imaging 2005: Image Processing; 2005 Feb 14-17, San Diego, CA, USA; 5747:755-63.

Riker D, Suter M, Ferguson JS, Hoffman EA, McLennan G. The assessment of airway mucosal function using fluorescein angiography. In: Amer J Respiratory and Critical Care Medicine; 2005 May 20-25, San Diego, CA, USA; p. A334.

Suter M, Riker D, Reinhardt JM, Ferguson S, Hoffman EA, McLennan G. 3D Multi-modal description and analyses of pulmonary airway mucosa. In: Amer J Respiratory and Critical Care Medicine; 2005 May 20-25, San Diego, CA, USA; p. A336.

J. de Ryk, E. Namati, J. Reinhardt, C. Piker, Y. Xu, L. Liu, E. A. Hoffman, and G. McLennan, "A whole organ serial sectioning and imaging system for correlation of pathology to computed tomography," Proceedings of SPIE: Three-Dimensional and Multidimensional Microscopy, vol. 5324, pp. 224-234, 2004.

E. Namati and J. Li, "A Novel Shape Descriptor Based on Empty Morphological Skeleton Subsets," presented at 2004 International Symposium on Intelligent Multimedica, Video and Speech Processing, Hong Kong, 2004.

J. R. Thiesse, E. Namati, J. De Ryk, E. Hoffman, F. Rosenthal, and G. McLennan, "Bright field segmentation tomography (BFST) for use as surface identification in stereomicroscopy," presented at Photonics West, San Jose, CA, 2004.

Suter M, Reinhardt JM, Sonka M, Higgins WE, Hoffman EA, McLennan G. Three-dimensional true color topographical analysis of the pulmonary airways. In: Amini AA, Manduca A, editors. Proceedings of SPIE Medical Imaging 2004: Physiology, Function, and Structure from Medical Images; 2004 Feb 14-19, San Diego, CA, USA: 5369:189-98.

Suter M, Reinhardt JM, Higgins W, Delsing A, Riker D, Flaherty D, Carter B, Zabner J, Hoffman EA, McLennan G. Illumination-independent analysis of mucosal surface reflectance in 3D true color airway images. In: Amer J Respiratory and Critical Care Medicine; 2004 May 21-26, Orlando, FL, USA; p. A546.

Cong W, Kumar D, Kang Y, Sinn P, Nixon E, Meinel J, Suter M, Wang LV, McLennan G, Hoffman EA, Wang G. In vivo tomographic imaging based on bioluminescence. In: Bonse U, editor. Proceedings of SPIE Developments in X-Ray Tomography IV; 2004 Aug 2-6, Denver, CO, USA; 5535:212-219.

Suter M, Reinhardt J, Gopalakrishnan D, Donnelley M, Delsing A, Zabner J, Flaherty D, Carter B, Hoffman E, McLennan G. Pulmonary disease detection based on airway mucosal color. In: Amer J Respiratory and Critical Care Medicine; 2003 May 16-21, Seattle, WA, USA; 167:A584.

Wang G, Hoffman EA, McLennan G, Wang LV, Suter M, Meinel JF. Development of the first bioluminescent CT scanner. In: Radiology; 2003 Nov 30 - Dec 5, Chicago, IL, USA; 229:566.

Gopalakrishnan D, McLennan G, Donnelley M, Delsing A, Suter M, Flaherty D, Zabner J, Hoffman EA, Reinhardt J. Color analysis of the human airway wall. In: Clough AV, Chen CT, editors. Proceedings of SPIE Medical Imaging 2002: Physiology and Function from Multidimensional Images; 2002 Feb 23-28, San Diego, CA, USA; 4683:341-51.

Abstracts

J. de Ryk, J. Thiesse, E. A. Hoffman, and G. McLennan, "Registration and Classification of Multi-Modal Lung Image Data," presented at Engineering and the Physical Sciences in Medicine, Adeliade, SA, Australia, 2005.

J. de Ryk, J. Thiesse, E. Namati, J. M. Reinhardt, E. A. Hoffman, and G. McLennan, "A novel microscopy system for linking CT and histology in soft tissue diagnostic imaging," presented at American Thoracic Society, San Diego, CA, USA, 2005.

J. R. Thiesse, J. De Ryk, S. Bond, J. Vislisel, E. Hoffman, E. Namati, J. Reinhardt, and G. McLennan, "Assesment of mouse lung fixation pressures using computed tomography," presented at American Thoracic Society, San Diego, CA, 2005.

J. R. Thiesse, J. Reinhardt, J. De Ryk, E. Namati, J. Leinen, W. Recheis, E. Hoffman, and G. McLennan, "Three-dimensional visual truth of normal airway tree for use as a quantitative comparison to micro-CT reconstructions," presented at Medical Imaging, San Diego, CA, 2005.

Suter M, Reinhardt JM, Riker D, Higgins W, Hoffman EA, McLennan G. Macro-optical color assessment of the pulmonary airways with subsequent 3D MDCT assisted display. In: Fourth Inter-Institute Workshop on Optical Diagnostic Imaging from Bench to Bedside at the National Institutes of Health; 2004 Sep 20-22, Bethesda, MD, USA.

E. Namati, J. De Ryk, G. McLennan, E. Hoffman, and C. Piker, "A Novel Whole-organ Serial Sectioning and Image Acquisition System.," presented at 2003 World Congress on Biomdeical Engineering Proceedings, Sydney, Australia, 2003.

McLennan G, Suter M, Tschirren J, Reinhardt J, Sonka M, Higgins W, Hoffman E. Evaluation of the human airway with MDCT and optical imaging. In: Proceeding of World Congress on Medical Physics and Biomedical Engineering; 2003 Aug 24-29; Sydney, Australia.

Publications

Suter M, Reinhardt JM, Zabner J, Montague P, Taft P, Lee J, McLennan G. Bronchoscopic imaging of pulmonary mucosal vasculature responses to inflammatory mediators. J Biomed Opt 2005; 10(3):(In press).

Suter M, Reinhardt JM, Riker, D, Higgins W, Hoffman EA, McLennan G. Macro-optical color assessment of the pulmonary airways with subsequent 3D MDCT assisted display. J Biomed Opt 2005;(In press).

K. M. Baker, E. Namati, E. Hoffman, E. J. R. Van Beek, A. Ross, and G. McLennan, "Virtual bronchoscopy: new applications for MDCT in pulmonolgy," Advances in MDCT, vol. 3, pp. 10-18, 2007.

J. de Ryk, J. Thiesse, E. Namati, and G. McLennan, "Stress distribution in a three dimensional, geometric alveolar sac under normal and emphysematous conditions," Int J Chron Obstruct Pulmon Dis, vol. 2, pp. 81-91, 2007.

G. McLennan, E. Namati, J. Ganatra, M. Suter, E. E. O'Brien, K. Lecamwasam, E. J. R. Van Beek, and E. Hoffman, "Virtual Bronchoscopy," MRI, vol. 11, pp. 10-20, 2007.

E. Namati, J. De Ryk, J. Thiesse, Z. Towfic, E. Hoffman, and G. McLennan, "Large image microscope array for the compilation of multimodality whole organ image databases," Anat Rec (Hoboken), vol. 290, pp. 1377-87, 2007.

E. Namati, J. Thiesse, J. de Ryk, and G. McLennan, "Alveolar Dynamics During Respiration: Are the Pores of Kohn a Pathway to Recruitment?," Am J Respir Cell Mol Biol, 2007.

E. Namati, D. Chon, J. Thiesse, E. A. Hoffman, J. de Ryk, A. Ross, and G. McLennan, "In vivo micro-CT lung imaging via a computer-controlled intermittent iso-pressure breath hold (IIBH)
technique," Phys Med Biol, vol. 51, pp. 6061-75, 2006.

Suter M, Tschirren J, Reinhardt J, Sonka M, Hoffman E, Higgins W, McLennan G. Evaluation of the human airway with multidetector X-ray computed tomography and optical imaging. Physiological Measurement 2004; 25(4):837-47.

Rooney CP, Suter M, McLennan G, Donnelley M, Reinhardt JM, Delsing A, Hoffman EA, Zabner J. Laser Fluorescence bronchoscopy for detection of fluorescent reporter genes in airway epithelia. Gene Therapy 2002; 9(23):1639-44.