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Publications since 2005

Suter M, Reinhardt JM, Riker D, Ferguson JS, McLennan G.  Classification of pulmonary airway disease based on mucosal color analysis.  Proc SPIE 5746:465, 2005.

Kumar D, Cong W, Thiesse J, Nixon E, Meinel J Jr, Cong A, McLennan G, Hoffman EA, Ming J, Wang G.  Image-guided simulation for bioluminescence tomographic imaging.  Proc SPIE 5744:741, 2005.

Kiraly AP, Reinhardt JM, Hoffman EA, McLennan G, Higgins WE.  Virtual bronchoscopy for quantitative airway analysis.  Proc SPIE 5746:369, 2005.

Suter M, Reinhardt JM, Hoffman EA, McLennan G.  3D pulmonary airway color image reconstruction via shape from shading and virtual bronchoscopy imaging techniques.  Proc SPIE 5747:755, 2005.

Zhang X, McLennan G, Hoffman EA, Sonka M.  A complete CAD system for pulmonary nodule detection in high resolution CT images.  Proc SPIE 5747:85, 2005.

Zhang X, McLennan G, Hoffman EA, Sonka M.  3D segmentation of non-isolated pulmonary nodules in high resolution CT images.  Proc SPIE 5747:1438, 2005.

Xu Y, Sonka M, McLennan G, Guo J, Hoffman EA.  Sensitivity and specificity of 3D texture analysis of lung parenchyma is better than 2D for discrimination of lung pathology in stage 0 COPD.   Proc SPIE 5746:474, 2005.

Thiesse J, Reinhardt JM, de Ryk J, Namati E, Leinen J, Recheis WA, Hoffman EA, McLennan G.  Three-dimensional visual truth of the normal airway tree for use as a quantitative comparison to micro-CT reconstructions.  Proc SPIE 5746:50, 2005.

Yeager H, Rossman MD, Baughman RP, Teirstein AS, Judson MA, Rabin DL, Iannuzzi MC, Rose C, Bresnitz EA, DePalo L, Hunninghake G, Johns CJ, McLennan G, Moller DR, Newman LS, Rybicki B, Weinberger SE, Wilkins PC, Cherniack R; ACCESS Research Group.  Pulmonary and phychosocial findings at enrollment in the ACCESS study.  Sarcoidosis Vasc Diffuse Lung Dis 22(2):147-53, 2005.

Rooney CP, Ferguson JS, Barnhart W, Cook-Granroth J, Ross A, Hoffman EA, McLennan G. Use of 3-dimensional computed tomography reconstruction studies in the preoperative assessment of patients undergoing balloon dilation for tracheobronchial stenosis.  Respiration 72(6):579-86, 2005.

Suter M, Reinhardt J, Montague P, Taft P, Lee J, Zabner J, McLennan G.  Bronchoscopic imaging of pulmonary mucosal vasculature responses to inflammatory mediators.  J Biomed Opt 10(3):034013, 2005.

Pan Y, Kumar D, Hoffman EA, Christensen GE, McLennan G, Song JH, Ross A, Simon BA, Reinhardt JM.  Estimation of regional lung expansion via 3D image registration.  Proc SPIE 5746:453, 2005.

Recheis WA, Nixon E, Thiesse J, McLennan G, Ross A, Hoffman E.  Methods of in-vivo mouse lung micro-CT.  Proc SPIE 5746:40, 2005.

Saba OI, Chon D, Beck K, McLennan G, Sieren J, Reinhardt J, Hoffman EA.  Static versus prospective gated non-breath hold volumetric MDCT imaging of the lungs.  Acad Radiol 12(11):1371-84, 2005.

Suter M, McLennan G, Reinhardt JM, Riker D, Hoffman EA.  Macro-optical color assessment of the pulmonary airways with subsequent three-dimensional multidetector-x-ray-computed-tomography assisted display.  J Biomed Opt 10(5):51703, 2005.

Tschirren J, Hoffman EA, McLennan G, Sonka M.  Segmentation and quantitative analysis of intrathoracic airway trees from computed tomography images.  Proc Am Thorac Soc 2(6):484-7, 2005.

Ferguson JS, McLennan G.  Virtual bronchoscopy.  Proc Am Thorac Soc 2(6):488-91, 2005.

Tschirren J, Hoffman EA, McLennan G, Sonka M.  Intrathoracic airway trees: segmentation and airway morphology analysis from low-dose CT scans.  IEEE Trans Med Imaging 24(12):1529-39, 2005. 

Tschirren J, McLennan G, Palagyi K, Hoffman EA, Sonka M.  Matching and anatomical labeling of human airway tree.  IEEE Trans Med Imaging 24(12):1540-7, 2005. 

De Ryk J, Thiesse J, Reinhardt JM, Hoffman EA, McLennan G.  Establishing multimodality datasets with the incorporation of 3D histopathology for soft tissue classification.  Proc SPIE 6144:614437, 2006.

Xu Y, Sonka M, McLennan G, Guo J, Hoffman EA.  MDCT-based 3-D texture classification of emphysema and early smoking related lung pathologies.  IEEE Trans Med Imaging 25(4):464-475, 2006.

Xu Y, van Beek EJ, McLennan G, Guo J, Sonka M, Hoffman E.  Effect of mixing scanner types and reconstruction kernels on the characterization of lung parenchymal pathologies: emphysema, insterstitial pulmonary fibrosis and normal non-smokers.  Proc SPIE 6143:61430M, 2006.

Xu Y, van Beek EJ, Hwanjo Y, Guo J, McLennan G, Hoffman EA.  Computer-aided classification of interstitial lung diseases via MDCT:3D adaptive multiple feature method (3D AMFM).  Acad Radiol 13(8):969-978, 2006.

Hoffman EA, Simon BA, McLennan G.  State of the Art.  A structural and functional assessment of the lung via multidetector-row computed tomography: phenotyping chronic obstructive pulmonary disease.  Proc Am Thorac Soc 3(6):519-32, 2006.

Ferguson JS, Rippentrop JM, Fallon B, Ross AF, McLennan G.  Management of obstructing pulmonary broncholithiasis with three-dimensional imaging and holmium laser lithotripsy.  Chest 130(3):909-12, 2006. 

Meyer CR, Johnson TD, McLennan G, Aberle DR, Kazerooni EA, Macmahon H, Mullan BF, Yankelevitz DF, van Beek EJ, Armato SG 3rd, McNitt-Gray MF, Reeves AP, Gur D, Henschke CI, Hoffman EA, Bland PH, Laderach G, Paus R, Quing D, Piker C, Guo J, Starkey A, Max D, Croft BY, Clarke LP.  Evaluation of lung MDCT nodule annotation across radiologists and methods.  Acad Radiol 13(10):1254-65, 2006. 

Namati E, Chon D, Thiesse J, McLennan G, Sieren J, Ross A, Hoffman EA.  In vivo micro-CT imaging of the murine lung via a computer controlled intermittent iso-pressure breath hold (IIBH) technique.  Proc SPIE 6143:614305, 2006.

Zhang X, Stockel J, Wolf M, Cathier P, McLennan G, Hoffman EA, Sonka M.  Computerized detection of pulmonary nodules using a combination of 3D global and local shape information based on helical CT images.  Proc SPIE 6144:61441V, 2006.

Namati E, Chon D, Thiesse J, Hoffman EA, de Ryk J, Ross A, McLennan G.  In vivo micro-CT lung imaging via a computer-controlled intermittent iso-pressure breath hold (IIBH) technique.  Phys Med Bio 51:6061-6075, 2006.

Shi L, Thiesse J, McLennan G, Hoffman EA, Reinhardt JM.  Three-dimensional murine airway segmentation in micro-CT images.  Proc SPIE 6511:651105, 2007.

Lin CL, Tawhai MH, McLennan G, Hoffman EA.  Characteristics of the turbulent laryngeal jet and its effect on airflow in the human intra-thoracic airways.  Respir Physiol Neorobiol 157(2-3):295-309, 2007.

Hendee WR, Banovac F, Carson PL, DeFronzo RA, Eckelman WC, Fullerton GD, Larson SM, McLennan G, Welch MJ.  Biomedical imaging research opportunities workshop IV: A White Paper.  Med Phys 34(2):673-9, 2007.

McLennan G, Ferguson JS, Thomas K, Delsing AS, Cook-Granroth J, Hoffman EA.  The use of MDCT-based computer navigation for mediastinal and perihilar lymph node biopsy: A randomized controlled perspective trial.  Respiration 74(4):423-431, 2007.

DeRyk J, Thiesse J, Namati E, McLennan G.  Stress distribution in a three dimensional, geometric alveolar sac under normal and emphysematous conditions.  International J COPD 2(1):81-91, 2007.

Strange C, Herth F, Kovitz K, McLennan G, Ernst A, Goldin J, Noppen M, Criner G, Sciruba F.  Design of the endobronchial valve for emphysema palliation trial (VENT): a non-surgical method of lung volume reduction.  BMC Pulmon Med 7:10, 2007.

McLennan G, Namati E, Ganatra J, O’Brien EE, Lecamwaswam K, Van Beek EJR, Hoffman E.  Virtual Bronchoscopy.  Imaging Decisions MRI 11(1):2-9, 2007.

Kelloff CJ, Sullivan DC, Baker H, Clarke LP, Nordstrom R, Tatus JL, Dorfman GS, Jacobs P, Berg CD, Pomper MG, Birrer MJ, Tempero M, Higley HR, Petty BG, Sigman CC, Maley C, Sharma P, Wax A, Ginsberg GG, Dannenberg AJ, Hawk ET, Messing EM, Grossman HB, Harisinghani M, Bigio IJ, Griebel D, Henson DE, Fabian CJ, Ferrara K, Fantini S, Schnall MD, Zujewski JA, Hayes W, Klein EA, DeMarzo A, Ocak I, Ketterling JA, Tempany C, Shtern F, Parnes HL, Gomez J, Srivastava S, Szabo E, Lam S, Seibel EJ, Massion P, McLennan G, Cleary K, Suh R, Burt RW, Pfeiffer RM, Hoffman JM, Roy HK, Wang T, Limburg PJ, El-Deiry WS, Papadimitrakopoulou V, Hittelman WN, MacAulay C, Veltri RW, Solomon D, Jeronimo J, Richards-Kortum R, Johnson KA, Viner JL, Stratton SP, Rajadhyaksha M, Dhawan A : Workshop Program Committee.  Workshop in imaging science development for cancer prevention and preemption.  Cancer Biomark 3(1):1-33, 2007.

Namati E, De Ryk J, Thiesse J, Towfic Z, Hoffman E, McLennan G.  Large image microscope array for the compilation of multimodality whole organ image databases.  Anat Rec (Hoboken) 290(11):1377-1387, 2007.

Andrews BT, Graham SM, Ross AF, Barnhart WH, Ferguson JS, McLennan G.  Technique, utility, and safety of awake tracheoplasty using combined laser and balloon dilation.  Laryngoscope 117(12):2159-2162, 2007.

Armato SG 3rd, Roberts RY, McLennan G, McNitt-Gray MF, Yankelevitz D, Kazerooni EA, van Beek EJR, MacMahon H, Aberle DR, Meyer CR, Reeves AP, Henschke CI, Hoffman EA, Croft BY, Clarke LP.  The Lung Image Database Consortium (LIDC): a quality assurance model for the collection of expert-defined truth in lung-nodule-based image analysis studies.  Proc SPIE 6514:651429, 2007.

Armato SG 3rd, Roberts RY, McNitt-Gray MF, Meyer CR, Reeves AP, McLennan G, Engelmann RM, Bland PH, Aberle DR, Kazerooni EA, MacMahon H, van Beek EJ, Yankelevitz D, Croft BY, Clarke LP.  The Lung Image Database Consortium (LIDC): ensuring the integrity of expert-defined “truth”.  Acad Radiol 14(12):1455-1463, 2007.

Armato SG 3rd, McNitt-Gray MF, Reeves AP, Meyer CR, McLennan G, Aberle DR, Kazerooni EA, MacMahon H, van Beek EJ, Yankelevitz D, Hoffman EA, Henschke CI, Roberts RY, Brown MS, Engelmann RM, Pais RC, Piker CW, Qing D, Kocherginsky M, Croft BY, Clarke LP.  The Lung Image Database Consortium (LIDC): an evaluation of radiologist variability in the identification of lung nodules on CT scans.  Proc SPIE 6514:65140K, 2007.

McNitt-Gray MF, Armato SG 3rd, Meyer CR, Reeves AP, McLennan G, Pais RC, Freymann J, Brown MS, Engelmann RM, Bland PH, Laderach GE, Piker C, Guo J, Towfic Z, Qing DP, Yankelevitz DF, Aberle DR, van Beek EJ, MacMahon H, Kazerooni EA, Croft BY, Clarke LP.  The Lung Image Database Consortium (LIDC) data collection process for nodule detection and annotation.  Acad Radiol 14(12):1464-1474, 2007.

McNitt-Gray MF, Armato SG 3rd, Meyer CR, Reeves AP, McLennan G, Pais RC, Freymann J, Brown MS, Engelmann RM, Bland PH, Laderach GE, Piker C, Guo J, Towfic Z, Qing DP, Yankelevitz DF, Aberle DR, van Beek EJ, MacMahon H, Kazerooni EA, Croft BY, Clarke LP.  The Lung Image Database Consortium (LIDC) data collection process for nodule detection and annotation.  Acad Radiol 14(12):1464-1474, 2007.

Reeves AP, Blancardi AM, Apanasovich TV, Meyer CR, MacMahon H, van Beek EJR, Kazerooni EA, Yankelevitz D, McNitt-Gray MF, McLennan G, Armato SG 3rd, Aberle DR, Henschke CI, Hoffman EA, Croft BY, Clarke LP.  The Lung Image Database Consortium (LIDC): pulmonary nodule measurements, the variation, and the difference between different size metrics.  Proc SPIE 6514:65140J, 2007.

Reeves AP, Biancardi AM, Apanasovich TV, Meyer CR, MacMahon H, van Beek EJ, Kazerooni EA, Yankelevitz D, McNitt-Gray MF, McLennan G, Armato SG 3rd, Henschke CI, Aberle DR, Croft BY, Clarke LP.  The Lung Image Database Consortium (LIDC): a comparison of different size metrics for pulmonary nodule measurements.  Acad Radiol 14(12):1475-1485, 2007.

Zhang X, Stockel J, Wolf M, Cathier P, McLennan G, Hoffman EA, Sonka M.  A new method for spherical object detection and its application to computer aided detection of pulmonary nodules in CT images.  Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv 10(Pt 1):842-849, 2007.

Namati E. Thesse J, de Ryk J, McLennan G.  Alveolar dynamics during respiration: are the pores of Kohn a pathway to recruitment?  Am J Respir Cell Mol Biol Epub (PMID 18096874), 2007.

De Ryk J, Weydert J, Christensen G, Thiesse J, Namati E, Reinhardt J, Hoffman E, McLennan G.  Three-dimensional histopathology of lung cancer with multimodality image registration.  Proc SPIE 6512:65122F, 2007.

Suter M, McLennan G.  Integrated CT/bronchoscopy in the central airways: preliminary results.  Acad Radiol 15(6):786-798, 2008.

Li B, Christensen GE, Hoffman EA, McLennan G, Reinhardt JM.  Pulmonary CT image registration and warping for tracking tissue deformation during the respiratory cycle through 3D consistent image registration.  Med Phys 35(12):5575-5583, 2008.

Rogers CS, Abraham WM, Brogden KA, Engelhardt JF, Fisher JT, McCray PB Jr, McLennan G, Meyerholz DK, Namati E, Ostedgaard LS, Prather RS, Sabater JR, Stoltz DA, Zabner J, Welsh MJ.  The porcine lung as a potential model for cystic fibrosis.  Am J Physiol Lung Cell Mol Physiol 295(2):L240-263, 2008.

Lin CL, Tawhai M, McLennan G, Hoffman E.  Computational fluid dynamics.  IEEE Eng Med Biol Mag 28(3):25-33, 2009.

Criner GJ, Pinto-Plata V, Strange C, Dransfield M, Gotfreid M, Leeds W, McLennan G, Refaely Y, Tewari S, Krasna M, Celli B.  Biologic lung volume reduction in advanced upper lobe emphysema: phase 2 results.  Am J Respir Crit Care Med 179(9):791-798, 2009.

Armato SG 3rd, Roberts RY, Kocherginsky M, Aberle DR, Kazerooni EA, Macmahon H, van Beek EJ, Yankelevitz D, McLennan G, McNitt-Gray MF, Meyer CR, Reeves AP, Caligiuri P, Quint LE, Sundaram B, Croft BY, Clarke LP.  Assessment of radiologist performance in the detection of lung nodules: dependence on the definition of “truth”.  Acad Radiol 16(1):28-38, 2009.

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